Welcome to Introduction to Bioimage Analysis using QuPath!#
This deck of slides introduces participants to the key concepts of bioimage analysis using the open-source software QuPath. It is designed as a primer for biologists who need to analyze images as part of their research but are new to image analysis.
The following materials were developed for a workshop taught in-person at Harvard Medical School, organized by the Image Analysis Collaboratory.
Downloadable Resources#
Course slides:
Whole-slide image materials:
Download the .vsi whole-slide image (ZIP)
Kudos to Nina Kozlova (Muranen Lab, BIDMC, HMS) for providing this example whole-slide image.
Useful Links#
Here are some helpful resources to complement the workshop materials:
Topics#
Below are the core sections of this workshop, each covering some aspects of bioimage analysis with QuPath.